diff --git a/tests/count_paired_wide_contig.tsv b/tests/count_paired_wide_contig.tsv new file mode 100644 index 00000000..f9be476d --- /dev/null +++ b/tests/count_paired_wide_contig.tsv @@ -0,0 +1,3 @@ +gene count +AAC73112 14 +AAC73113 50 diff --git a/tests/paired_contig.bam b/tests/paired_contig.bam new file mode 100644 index 00000000..d04b988f Binary files /dev/null and b/tests/paired_contig.bam differ diff --git a/tests/tests.yaml b/tests/tests.yaml index de6024f9..d7538567 100644 --- a/tests/tests.yaml +++ b/tests/tests.yaml @@ -106,6 +106,12 @@ count_tab_single: references: [count_tab.tsv] options: count_tab -L test.log +count_paired_wide_contig: + stdin: paired_contig.bam + outputs: [stdout] + references: [count_paired_wide_contig.tsv] + options: count -L test.log --random-seed=123456789 --method=directional --per-contig --paired --umi-separator="|" --wide-format-cell-counts + # python 2 tests ## dedup_single_ignore: