v0.1.0

0.1.0 (2023-01-31)

Features

• a new --no-normalize parameter for simphenotype (#156) (24a0867)
• add --seed to simphenotype (#162) (9f7890a)
• change default verbosity to INFO (#157) (18ff090)
• github actions for publishing (#141) (5cf6f29)
• Significantly decreased runtime of simgenotype (#163) (de011d0)
• updated .vcf.gz output in simgenotype (#150) (f61f613)
• Updated simgenotype to allow only breakpoint generation (#167) (c0c3c97)

Bug Fixes

• Added an additional test file containing only autosome centromeres (#168) (ca220e7)
• Added utilization of logging class to karyogram and simgenotype (#159) (bcf778a)
• case where genotypes are all the same but heritability is specified in simphenotype (#145) (063b411)
• Fixed logic error in simgenotype and docs errors (#172) (18dd27f)
• issue where breakpoints weren't outputting (#144) (ff90bff)
• logging so that it doesn't affect the root logger (#154) (c1dc1ef)
• pin numpy to ensure a recent version of numpy (#151) (7c84a45)
• Update maps.rst (#170) (8ace893)

Documentation

• better showcase example files and their locations in simgenotype (#166) (6995407)
• updates for v0.1.0 (#171) (714142f)

v0.0.3

• fixes an issue with reading and writing compressed files in python 3.10+ (#139)
• removes an explicit dependency declaration for importlib-metadata
• removes brewer2mpl dependency
• adds nox to our testing suite
• various fixes to example commands in the documentation
• updates to the installation instructions

v0.0.2

• remove myst-parser as a dependency (#134)

v0.0.1

Our initial release!