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modules.json
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{
"name": "nf-core/rnaseq",
"homePage": "https://github.com/nf-core/rnaseq",
"repos": {
"nf-core/modules": {
"cat/fastq": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"fastqc": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"gffread": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"gunzip": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"hisat2/align": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"hisat2/build": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"hisat2/extractsplicesites": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"picard/markduplicates": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"preseq/lcextrap": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"qualimap/rnaseq": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"rsem/calculateexpression": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"rsem/preparereference": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"rseqc/bamstat": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"rseqc/inferexperiment": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"rseqc/innerdistance": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"rseqc/junctionannotation": {
"git_sha": "5dd049047d01e72c01a519422f17e203bca343ac"
},
"rseqc/junctionsaturation": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"rseqc/readdistribution": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"rseqc/readduplication": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"salmon/index": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"salmon/quant": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"samtools/flagstat": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"samtools/idxstats": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"samtools/index": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"samtools/sort": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"samtools/stats": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"sortmerna": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"star/align": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"star/genomegenerate": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"stringtie/stringtie": {
"git_sha": "217303f5c1a92effb8a97c29294ee9f2e19f697e"
},
"subread/featurecounts": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"trimgalore": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"ucsc/bedclip": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"ucsc/bedgraphtobigwig": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"umitools/dedup": {
"git_sha": "2ade120249b92e382f964bd75701befa2c2dc75d"
},
"umitools/extract": {
"git_sha": "2ade120249b92e382f964bd75701befa2c2dc75d"
},
"untar": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
},
"stringtie/merge": {
"git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d"
}
}
}
}