diff --git a/CHANGELOG.md b/CHANGELOG.md index 695d14c93..a49928180 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,6 +5,13 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html). ## [Unreleased] + +## [2.0.1] +### Changed +- Fixed syntax errors where functions were marked with `@inbounds` instead of + `@inline`. + +## [2.0] ### Added - New subtypes of Random.Sampler, SamplerUniform and SamplerWeighted. - Random `LongSequence`s can now be created with `randseq`, @@ -26,6 +33,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. - Generators of bit-parallel iteration code have been introduced to help developers write bitparallel implementations of some methods. Counting GC content, matches and mismatches have been migrated to use these generators. +- Added `occursin` methods for exact matching. ### Changed - The abstract `Sequence` type is now called `BioSequence{A}`. @@ -125,7 +133,9 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. - All files pertaining to the old Bio.Seq module. -[Unreleased]: https://github.com/BioJulia/BioSequences.jl/compare/v1.1.0...HEAD +[Unreleased]: https://github.com/BioJulia/BioSequences.jl/compare/v2.0.1...HEAD +[2.0.1]: https://github.com/BioJulia/BioSequences.jl/compare/v2.0.0...v2.0.1 +[2.0.0]: https://github.com/BioJulia/BioSequences.jl/compare/v1.1.0...v2.0.0 [1.1.0]: https://github.com/BioJulia/BioSequences.jl/compare/v1.0.0...v1.1.0 [1.0.0]: https://github.com/BioJulia/BioSequences.jl/compare/v0.8.3...v1.0.0 [0.8.3]: https://github.com/BioJulia/BioSequences.jl/compare/v0.8.2...v0.8.3 diff --git a/Project.toml b/Project.toml index 8595c4733..9bfdb9d92 100644 --- a/Project.toml +++ b/Project.toml @@ -13,7 +13,9 @@ Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" Twiddle = "7200193e-83a8-5a55-b20d-5d36d44a0795" [compat] +BioGenerics = "0.1.0" BioSymbols = "4.0.0" +Combinatorics = "1.0.0" IndexableBitVectors = "1.0.0" Twiddle = "1.1.1" julia = "1.1.0"