pyproject.toml

[build-system]
requires = ["setuptools>=42", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "argnorm"
dynamic = ['version']
description = "Normalize antibiotic resistance genes (ARGs) results by using the ARO ontology (developed by CARD)."
readme = "README.md"
authors = [
    { name = "ArgNorm Developers", email = "luispedro@big-data-biology.org" }
]
license = { text = "MIT" }
requires-python = ">=3.7"
keywords = ["bioinformatics", "antibiotic-resistance", "ontology"]
dependencies = [
    "pandas",
    "pronto"
]
classifiers = [
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Programming Language :: Python :: 3.7",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Development Status :: 5 - Production/Stable",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
    "Natural Language :: English",
]

[project.urls]
Homepage = "https://github.com/BigDataBiology/argNorm"

[project.optional-dependencies]
dev = ["pytest"]

[tool.setuptools]
packages = ["argnorm", "argnorm.data"]
include-package-data = true

[tool.setuptools.package-data]
"argnorm" = ["data/aro.obo", "data/*.tsv", "data/manual_curation/*.tsv"]

[project.scripts]
argnorm = "argnorm.cli:main"

[tool.setuptools.dynamic]
version = {attr = "argnorm.argnorm_version.__version__"}