Could DISCO potentially map in-paralogs that it removes to the sub-trees that it produces?

[000generic]

Hi,

DISCO has been great to work with - thank you! I'm still exploring how to implement it into my pipelines / what might be done with it more generally.

One thing I am interesting in is generating gene trees that are single-copy per species but include all species-specific in-paralog gene duplicates.

To leverage DISCO to assist with this, I was wondering if it would be possible for DISCO to report which in-paralogs would go with which subtree it has produced? Or something along these lines? Then I can add them back into a pre-alignment fasta of subtree sequences - and rerun alignment and tree building - and go from there.

Or that is the idea.

Thank you very much!
Eric