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inspect_files.txt
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./code/scripts/s04c_amica.htb:1:[dep_path]/[amica_ver] derivatives/BIDS-Lossless-EEG/[batch_dfn,_,-1]_C.param
./code/scripts/s04a_amica.htb:1:[dep_path]/[amica_ver] derivatives/BIDS-Lossless-EEG/[batch_dfn,_,-1]_A.param
./code/scripts/fixMarks.m:1:lossless_marks = load('derivatives/BIDS-Lossless-EEG/code/scripts/lossless_marks.mat');
./code/scripts/s02_amica_init.htb:1:[dep_path]/[amica_ver] derivatives/BIDS-Lossless-EEG/[batch_dfn,_,-1]_init.param
./code/scripts/ll_validate.m:7: [EEG, transform] = warp_locs( EEG,'derivatives/BIDS-Lossless-EEG/code/misc/standard_1005.elc', ...
./code/scripts/ll_validate.m:8: 'mesh', 'derivatives/BIDS-Lossless-EEG/code/misc/standard_vol.mat', ...
./code/scripts/localParam.m:21:ref_loc_file = 'derivatives/BIDS-Lossless-EEG/code/misc/standard_1020_ll_ref19.elc';
./code/scripts/s04b_amica.htb:1:[dep_path]/[amica_ver] derivatives/BIDS-Lossless-EEG/[batch_dfn,_,-1]_B.param
./code/scripts/s05_concat_data.htb:411:addpath([pwd '/derivatives/BIDS-Lossless-EEG/code/dependencies/eeglab_lossless/plugins/Fieldtrip-lite20190922/src'])
./code/dependencies/eeglab_lossless/plugins/vised_marks/README.md:12:This plugin is part of BUCANL's [Lossless](https://github.com/BUCANL/BIDS-Lossless-EEG) EEG pipeline. As part of this, all tutorials and documentation are written using the Face13 dataset. Instructions on how to download and initialize this data can be found, [here](https://github.com/BUCANL/BIDS-Init-Face13-EEGLAB).
./code/dependencies/eeglab_lossless/plugins/batch_context/README.md:8:This plugin is part of BUCANL's [Lossless](https://github.com/BUCANL/BIDS-Lossless-EEG) EEG pipeline. As part of this, all tutorials and documentation are written using the Face13 dataset. Instructions on how to download and initialize this data can be found, [here](https://github.com/BUCANL/BIDS-Init-Face13-EEGLAB).
./code/config/contextconfig.cfg:2: derivatives/BIDS-Lossless-EEG/log
./code/config/contextconfig.cfg:6: derivatives/BIDS-Lossless-EEG/code/dependencies
./code/config/contextconfig.cfg:16: graham.computecanada.ca:/scratch/user_name/project_name/derivatives/BIDS-Lossless-EEG/code/dependencies
./code/config/contextconfig.cfg:22: [config_dir] derivatives/BIDS-Lossless-EEG/code/config
./code/config/contextconfig.cfg:24: [script_dir] derivatives/BIDS-Lossless-EEG/code/scripts
./code/config/face13_sbatch/c05_concat_data.cfg:6: [in_path],derivatives/BIDS-Lossless-EEG
./code/config/face13_sbatch/c05_concat_data.cfg:17: [dip_vol], derivatives/BIDS-Lossless-EEG/code/misc/standard_vol.mat
./code/config/face13_sbatch/c05_concat_data.cfg:18: [dip_mri], derivatives/BIDS-Lossless-EEG/code/misc/standard_mri.mat
./code/config/face13_sbatch/c05_concat_data.cfg:19: [dip_elc], derivatives/BIDS-Lossless-EEG/code/misc/standard_1020.elc
./code/config/face13_sbatch/c05_concat_data.cfg:24: [out_path],derivatives/BIDS-Lossless-EEG
./code/config/face13_sbatch/c05_concat_data.cfg:28: derivatives/BIDS-Lossless-EEG/code/config/octave.sesinit
./code/config/face13_sbatch/c05_concat_data.cfg:36: derivatives/BIDS-Lossless-EEG/code/config/octave.minit
./code/config/face13_sbatch/c01_scalpart_remote.cfg:8: [staging_script],derivatives/BIDS-Lossless-EEG/code/scripts/face13_staging.m
./code/config/face13_sbatch/c01_scalpart_remote.cfg:25: [ref_loc_file],derivatives/BIDS-Lossless-EEG/code/misc/standard_1020_ll_ref19.elc
./code/config/face13_sbatch/c01_scalpart_remote.cfg:46: [out_path],derivatives/BIDS-Lossless-EEG
./code/config/face13_sbatch/c01_scalpart_remote.cfg:47: [amica_param_file],derivatives/BIDS-Lossless-EEG/code/misc/amica15_default.param
./code/config/face13_sbatch/c01_scalpart_remote.cfg:52: derivatives/BIDS-Lossless-EEG/code/config/octave.sesinit
./code/config/face13_sbatch/c01_scalpart_remote.cfg:60: derivatives/BIDS-Lossless-EEG/code/config/octave.minit
./code/config/face13_sbatch/c04a_amica_remote.cfg:6: [dep_path],derivatives/BIDS-Lossless-EEG/code/dependencies/eeglab_lossless/plugins/amica
./code/config/face13_sbatch/c04a_amica_remote.cfg:12: derivatives/BIDS-Lossless-EEG/code/config/amica.sesinit
./code/config/face13_sbatch/c04a_amica_remote.cfg:18: derivatives/BIDS-Lossless-EEG/code/config/amica.jobinit
./code/config/face13_sbatch/c03_compart_data_remote.cfg:6: [in_path],derivatives/BIDS-Lossless-EEG
./code/config/face13_sbatch/c03_compart_data_remote.cfg:16: [out_path],derivatives/BIDS-Lossless-EEG
./code/config/face13_sbatch/c03_compart_data_remote.cfg:17: [amica_param_file],derivatives/BIDS-Lossless-EEG/code/misc/amica_default.param
./code/config/face13_sbatch/c03_compart_data_remote.cfg:22: derivatives/BIDS-Lossless-EEG/code/config/octave.sesinit
./code/config/face13_sbatch/c03_compart_data_remote.cfg:30: derivatives/BIDS-Lossless-EEG/code/config/octave.minit
./code/config/face13_sbatch/c04c_amica_remote.cfg:6: [dep_path],derivatives/BIDS-Lossless-EEG/code/dependencies/eeglab_lossless/plugins/amica
./code/config/face13_sbatch/c04c_amica_remote.cfg:12: derivatives/BIDS-Lossless-EEG/code/config/amica.sesinit
./code/config/face13_sbatch/c04c_amica_remote.cfg:18: derivatives/BIDS-Lossless-EEG/code/config/amica.jobinit
./code/config/face13_sbatch/c04b_amica_remote.cfg:6: [dep_path],derivatives/BIDS-Lossless-EEG/code/dependencies/eeglab_lossless/plugins/amica
./code/config/face13_sbatch/c04b_amica_remote.cfg:12: derivatives/BIDS-Lossless-EEG/code/config/amica.sesinit
./code/config/face13_sbatch/c04b_amica_remote.cfg:18: derivatives/BIDS-Lossless-EEG/code/config/amica.jobinit
./code/config/face13_sbatch/c02_amica_init_remote.cfg:6: [dep_path],derivatives/BIDS-Lossless-EEG/code/dependencies/eeglab_lossless/plugins/amica
./code/config/face13_sbatch/c02_amica_init_remote.cfg:12: derivatives/BIDS-Lossless-EEG/code/config/amica.sesinit
./code/config/face13_sbatch/c02_amica_init_remote.cfg:18: derivatives/BIDS-Lossless-EEG/code/config/amica.jobinit
Binary file ./Desjardins_20_Lossless_preprint.pdf matches
./README:6:A reference manual for the pipeline can be found on the [Wiki](https://github.com/BUCANL/BIDS-Lossless-EEG/wiki)
./README:16:3. Within the derivatives folder, clone the pipeline locally: `git clone --recursive https://github.com/BUCANL/BIDS-Lossless-EEG.git`
./README:23:7. Within the derivatives folder, clone the pipeline on the remote: `git clone --recursive https://github.com/BUCANL/BIDS-Lossless-EEG.git`
./README:25:9. Run the remote setup and follow the on screen prompts: `bash derivatives/BIDS-Lossless-EEG/code/install/setup-remote.sh`
./README:31:12. In the Matlab console execute: `addpath derivatives/BIDS-Lossless-EEG/code/install`
./README:38:Feel free to make an issue in the [Issue Tracker](https://github.com/BUCANL/BIDS-Lossless-EEG/issues)
./README:39:or [contact us directly](https://github.com/BUCANL/BIDS-Lossless-EEG/wiki/Contacting-Us)
./dataset_description.json:5: "Name": "BIDS-Lossless-EEG",
./dataset_description.json:7: "CodeURL": "https://github.com/BUCANL/BIDS-Lossless-EEG"
./README.md:7:A reference manual for the pipeline can be found on the [Wiki](https://github.com/BUCANL/BIDS-Lossless-EEG/wiki)
./README.md:17:3. Within the derivatives folder, clone the pipeline locally. **NOTE:** Use the recursive flag in order to clone all the required submodules: `git clone --recursive https://github.com/BUCANL/BIDS-Lossless-EEG.git`
./README.md:24:7. Within the derivatives folder, clone the pipeline on the remote. **NOTE:** Use the recursive flag in order to clone all the required submodules: `git clone --recursive https://github.com/BUCANL/BIDS-Lossless-EEG.git`
./README.md:26:9. Run the remote setup and follow the on screen prompts: `bash derivatives/BIDS-Lossless-EEG/code/install/setup-remote.sh`
./README.md:32:12. In the Matlab console execute: `addpath derivatives/BIDS-Lossless-EEG/code/install`
./README.md:39:Feel free to make an issue in the [Issue Tracker](https://github.com/BUCANL/BIDS-Lossless-EEG/issues)
./README.md:40:or [contact us directly](https://github.com/BUCANL/BIDS-Lossless-EEG/wiki/Contacting-Us).