String_Spelled_python.py

# -*- coding: utf-8 -*-
"""
Created on Tue Dec 25 00:20:52 2018

@author: bjwil
"""

import os
import itertools

os.getcwd()

#os.chdir('C:\\Users\\bjwil\\Bioinformatics')

def window(s, k):
    for i in range(1 + len(s) - k):
        yield s[i:i+k]



sign = ' -> '
with open ('String_Spelled.txt', 'r') as in_file:
    lines = in_file.read().split()
    #s = lines[1]
    #k = int(lines[0])



genome_string = lines[0]

for idx,item in enumerate(lines[:-1]):
    genome_string = genome_string + lines[idx+1][-1]

with open('Output1.txt', 'w') as f:
    f.write(genome_string)
    
    
#genome_string == 'AAGCTCGACAAGACGCACCACCGATTATTTGGTAAAACCCCGCTTGGTCACCAGGAGTGTTGTGGTCAAACTTTAACTGAGCCGAACGTCTGGGACGGAGGGACCCTACGCTTGAAACACCCTGCGGGGAGAAATAATGTTTCGAGTCTAGAGGTTCACAACCATAAAGGTAATTGTCACCTGAGATCGTTAAGCCGACTTATTAACTAAAGGACTATCCCCACGAAAAGAGGACAGATCTACACTATTCCTACCGCTGATACGTTGGCTCTACGATCATATATTATATGGAGCCGTCCGACGTCACTTCAAACCGGTTTAAATCGAACAACGGTCCATTCCCCGACTAGGGCGGCCTATGGAGCGACGGATAGACTATCGCCGCGCGGGACTAACCCGCCGTGAGTCCCGGCTAAGAACTCCATCCTTCTGATGACACTCTACCATAGCTGAACCGTGACTATCAAACTAGTTGACTCGTGGCAGGATTCACGATTGACTTGACTTACCCCACCGAACGCAGTCCGGATAATGTCGCCTAGAGGTAACTTGTACGAGCCATCTTCCAGCGGCAGTCCGCAGATACTTTTGCATTGCCGCACCCGACGCGGAAATTTGTGGGAGGGCGGTGACCACTCGTACACGAGTCCATGCACCTCCGTTACCACAGGCCTAAATCGGACCCGCACAATCCCGGTGACTCGGATTTGCGTACAACCCGACCTCGAGCTGATTAATGGGCGGTTATATGGTACTCCCGTAGATAGTGGACCTCCAGCCCAGGTGGAGGGCTAACCCCCGTATGGCAGCACTAAACATCAGTCCGATCCGCATGAGCAGTAGATGGTGTAAATTTCTAGGAACGCCGTATGGTAACGCCTCGGCGTGAAGGGGGCATACAGATGAGATACATCGACTCACGTAGATTCATCCTACTTAGAATGAAGGCGGTTATGGTTATTTTGTGAAGATTAGTGCGAATGCACTGCCCTTGTAGGGCTGGCTGTCATTTCCGTGGCGTAGATTGTAGCACAGTTTTGGTTGCAATGATCACTTGCCCCGATCCTCACTACCGGCGACCAAAGGGATCAAAACGAGCTCGATGTCTGTGCTATGATTAGTCCTCAACATCGAGTAGGTTCACAAGGATTGCTCATAGACAGGGCCCATTGGTACTTTGATAAATTGTATCCAAGCGGGGGCCTAAGTTGTATTAACTGATTGCGATAAGTATTGAGCTCTGATCGGTGAAATGACTCGGAGCGCATCTGCTCTTGAGTACGACCGCTGAGATCATTAGGTTGACCTCGATTAAGGCGTATTGTCTAAAACACTGTCCGGGGGTGGCCTGCGAGAAAATTCACTATAAGGCGAATGCAGTCCACGAGTTGTAAAGGGAGGAAGCTCAAACTCCCCCCTAGGCTTGAAGCGTTCTCACGAGCACCGATGCCATCGTTAAACGTCAGTTATTACGGCACACCAACGGCATTTTCTCCCCCCTTTCGCCCTCGACCATTTAGTATATGGACATAATCATGATGAAGAATTTCAACTATCTTAGTGACGAGCTGTATGATTAGAAATCACAGTAGTGAAGTCACAACTACCCGCACACTTGGATGTTCAATGCCGTGTTGCACAACCCAACAGTGGTACATTCTCGCACTGCAAGGTGGGATATCAGGGCCTTAGTGCCCTTGGGTAGGCAACTGTGTGGTGACTACTGCATCCAAGCTAGGTGTTGCTAAACCGGATACGTACCTGGATGGGGACAAACTTGGCGTCTCCGAGCAGTGCTAAAGGGATACATTACCACATGCACACCTCTCAATTCGGTCAGGGGACTCGATGCCTCAATGGGTAGCGAGGATGGGTAGACACAAAAATGAAATCACCCACGTCGCCTTTAAGGGACAGTTATTGCGTGTCCTACTTTAATGCTAAGCGTTGGGTTTAGAGGTCATCTCACGATTTACGTCAAGTCGGCGTAGAACTGCCCCAAATTCCATACGTTATTCGAATGGATTGTCGTAACCGCGGCTCCGGGCGAATAGAGATATGAACAGTATGCTGCTTAAGGGCTTCGGCTCTCTGCGTTCACATGATACATTAATCAGTAAAAAGTTGGGTCATGACGAATATCCCGCTAGGTTAAGTTTGCCCATCCGCGGCGTCTCGGACAAATCCGCCAAAGACTCGTGCAGTCAGAAAAATCTTAACCCAAGTCCAAGATGGGGATCTCGCCCAAAATGGTGAGGCCGCGTGCGGACGCGACTTTCGGCCTATTTGCGGATATCATCAGGACCTGCGTATCTGTCGCGAGCAATAGAACTACTGTCCCTTCGGACTGGAAGAGCCCCGCGTGAACGCAGATCCATAGCAGGCGGTGGTTGAAACGTATGTATGTGCGCTCATCATTTCGTGGCTAGCGCCCAAATGCTCGAGCGCCGGTCAGGTGCAGGGTGACACGACACACGGCAATCCTGCAATTCAGTGGATAGCTACAACACTTGCGATCGAGGTTGGCCTGCCTCGAGCACTGAGACAGTGCCTACCGCCGTTAAGACTCACAGGGCAGAAATCTTGGTTTCAGTAATAGTAGTTCTCGGAACCATCGCGAGACAGTCGATGCAGACGACTTAACAGTGCATGTCGCGTGGGGAGCCGCTGAACTTTTTCAGTAACGATTGACTATAAAAGCCTACATCCATTCACGGAACCCACCCTAGGACCCTGAAGCCGCCCGTGTGCACCGGGGTGTTCTAAAGAATCCCTCCTTACCATTTCGGTTCGTCGGTAGAACCTCAGAGATGTACAAATGAACAACTAAAGCTAGTGCGGGACTCCCGGAGCCCAGAAGGCGTGCCCGTCAAAGTGACGATCAAGCTCAAGTCACGGATAAGCACGTCGTGTCACGAGTGAGCCTGGCAATCAGGGGGTCTACTAGTAACCCGTCTGACTAGCTATATAGGTCTATCGCCTGTTTCATCCGCATAACATACGAGGAAAACACTGCTAGCATGGTGCGCTGAAGGGTTTGGTGCCAACCTCCGCAAGGTCAATCTGCATCTTTCTGCACTGCATAACCCGCCTTATCTTAAGGGGGTTGCCTCAGAATCGTGCTATAAACATGTGCAATATTGATGGCTCCTTAGCGCCCATTGCCAAAAAATATTTAGGCGAAGATTGTGGTCATTGAGCGTCTAATAATAGCATGAATGCCAGTGGTACCATTCTGTCTAGACAATATGTTGTACGCTGCTGCCGACGACTGTTAATCCGTATCTTTTCGAGAACAACGCTTCTAAAGAGCTTGGCCTGCCTGTCCTGACCGACACATTAGCACTATAGTTGACTCGGATGCGCTCATACCTGTGCAGAGGTAAACCCCTTGGAGACAGGTCCTAAGCATTCCGTGCTAACCATAGCTAATATTTTAGCCCCTTGGCTGTAAAGAATAGGATTGGGGTGTCGGTAATAGGCTAATCTTGTATCCCGCGGTCCAGGTGCGGCCTGGGAGGCAGCACGTACATTAATCGAGCTATGGAGATAATTGTTAGTACCTGTGGAACTGTTTGAGTGCAATATGGCTCCCTTGCCGTGTGGGGGCTGAGATAAGTTCGTGAACAGAGAAGCTGATGTCGATAATAGATATTGTTACAAGAGACTTTAGTTTTATAACAAACTCAGATGACCGAGAAGTGTACCGTTGTTACACTCTATGGATCGGCATTAGGCTACGCGCACGTCCCCCCACGGCTTGCGCAGTACCCTCCGATCTCTATATACACTAGCTGTCGATGCGCGAATCTGTTGCCGTCATCTTCTTGCGTTATTTCCCGTGTCTAGGTACTCGGGGTGAAACATTACGGCTTAAATAGACGTATCCAATGAAAAGATTGCACTCGCGAAGTGACTCGACCAGCTATGTCGCCCTCCTATCTGACTCCACATCCGACGTTCGTTTAAGGCCTCGCGGTACAACTGTAGTCGTGACCGTGCACATCACTGATGAGGTTCATTCATAGAATTGTATGAAAGCACGAAACAATAATTTTCCTGTGGAGCTTTGGGTATTTGGACTCGAGGGCGCGAGGTCGTGTCCCTGGCAGTAACAAAACAAGTCTCCTGACAACATTCCCTAGAGGTACGAAATGTCCTACCGACCCCTCAATAGTTCGAGATTGAGTCTGACTAACTAGAACCCGCCATACTATATGGTCGTGCTAGATATATTAGCAGAGTTTCTTCCTGTCAGACTTCTATACTGTCGCACATACTTTCTTTGAAAACGTGCATATTGAGTGTCCAACACATGAACACAAGACGATTAGCGCCTACTTTCAAACCTTCCCTTCGGACCACGATTGAGTTGTGACTATAAGGTAGCCTGGATACACGCAATTAGGTACAGATACTCTACCACTGTTTTGTTTGTTGCTGGACCAAAAAGCGGCTCTCTGACCAATCTCATTAGTCTGGTTGTAGCTCAGATACACCTAAAAAAGCACCACGTGAGTTACAATTTGGTATATCCGTCCGTTCTAACAATCTGTTAACTCGCCGCTAATCTTTAAAACCTCCATACGGTGCATTGTCTCGTCAACTAATCTGCGCACATTAGACCAGTGATCTATCGCATCAATTATAAATCATTTCGGATAGAAGTATAGTGAAAGTTCACCAATAAGGTTGACCGCGTGTCGTCTGACGTAGAAGGTATCCAGGCGCCGAGGATACTAAGATAACACTTGAGAGTCATGTATCAGCGTGTTGAAGATTCGACGCGTTTGTCTTAGCTAGGCGGCTGCAGAGAGCACTACCACGCATACGAAGGTGTTTATTCGGAATTCTGCAACTAGAGTGCAGGTCATCAGCACGAATCGATCTTTTACGTTCAACATTCCGAAAGCGGAACGCCAACTGTCATAGTCCTGACTTAGTAGAGGCCTGAACAACTCCTCAATAAGGATAGACACGCAAGCGGAGATGCACGTCAG'
 
'''genome = {}

for i in range(1 + len(lines) - 1):
    genome[i] = lines[i] 
'''


'''
idx = 0
item = lines[0]
while len(lines) > 0:   
    for idx,item in enumerate(lines[:-1]):
        if lines[idx][-len(item)+1:] == lines[idx+1][0:len(item)-1]: 
            genome_string = genome_string + lines[idx+1][-1]
            
'''