From 8810f32aff5d8f936fe3c5f9ee28df32e470657c Mon Sep 17 00:00:00 2001
From: cimendes <iines.mendes@gmail.com>
Date: Fri, 12 Aug 2022 17:59:22 +0100
Subject: [PATCH] Update postprocessing.nf

---
 modules/postprocessing/postprocessing.nf | 1 +
 1 file changed, 1 insertion(+)

diff --git a/modules/postprocessing/postprocessing.nf b/modules/postprocessing/postprocessing.nf
index 3540b51..8c05d3e 100644
--- a/modules/postprocessing/postprocessing.nf
+++ b/modules/postprocessing/postprocessing.nf
@@ -155,6 +155,7 @@ process SNP_ASSESSMENT {
 
     tag { assembler }
     label 'process_script'
+    publishDir "results/$sample_id/stats/", pattern: '*.csv'
 
     input:
     tuple val(sample_id), val(assembler), path(assembly), path(mapping)