From 4533b584231d3eb3fa0e39d72926689145e9f231 Mon Sep 17 00:00:00 2001 From: cimendes Date: Thu, 18 Aug 2022 10:27:23 +0100 Subject: [PATCH] Update assembly_stats_mapping.py --- templates/assembly_stats_mapping.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/templates/assembly_stats_mapping.py b/templates/assembly_stats_mapping.py index 79d11b1..f4f2f6d 100644 --- a/templates/assembly_stats_mapping.py +++ b/templates/assembly_stats_mapping.py @@ -114,7 +114,7 @@ def get_covered_bases(covered_bases_list, ref_len): for base in range(start, stop): covered_bases.add(utils.adjust_reference_coord(base, ref_len)) - return len(covered_bases) + return len(covered_bases) - 1 #0 based index def get_aligned_bases(alignment_coods):