From acf4e46784e70bb2f32aedbfba06f35dbe17c7ed Mon Sep 17 00:00:00 2001 From: cimendes Date: Wed, 7 Dec 2022 16:58:23 +0000 Subject: [PATCH 1/3] up github action checkout version --- .github/workflows/ci_nextflow.yml | 2 +- .github/workflows/ci_templates.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci_nextflow.yml b/.github/workflows/ci_nextflow.yml index d06a9e3..4247b2d 100644 --- a/.github/workflows/ci_nextflow.yml +++ b/.github/workflows/ci_nextflow.yml @@ -13,7 +13,7 @@ jobs: matrix: nxf_ver: ['21.04.1', ''] steps: - - uses: actions/checkout@v2.3.4 + - uses: actions/checkout@v3 - name: Install Nextflow run: | export NXF_VER=${{ matrix.nxf_ver }} diff --git a/.github/workflows/ci_templates.yml b/.github/workflows/ci_templates.yml index 91c8c8c..3746409 100644 --- a/.github/workflows/ci_templates.yml +++ b/.github/workflows/ci_templates.yml @@ -14,7 +14,7 @@ jobs: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v3 with: python-version: 3.8 From 6292d18b4640e3089ba8d3454ec1331ed4736f8a Mon Sep 17 00:00:00 2001 From: cimendes Date: Wed, 7 Dec 2022 17:06:36 +0000 Subject: [PATCH 2/3] Update requirements.txt --- docker/LMAS/requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docker/LMAS/requirements.txt b/docker/LMAS/requirements.txt index 42b1872..19041b0 100644 --- a/docker/LMAS/requirements.txt +++ b/docker/LMAS/requirements.txt @@ -43,7 +43,7 @@ nest-asyncio notebook==6.0.3 numpy packaging -pandas==1.1.3 +pandas==1.5.1 pandocfilters==1.4.2 parso pathtools==0.1.2 From 4b89a049ced30d4fe494a2c00ab34446a68286e2 Mon Sep 17 00:00:00 2001 From: cimendes Date: Wed, 7 Dec 2022 17:11:33 +0000 Subject: [PATCH 3/3] Update ci_templates.yml --- .github/workflows/ci_templates.yml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/.github/workflows/ci_templates.yml b/.github/workflows/ci_templates.yml index 3746409..67a49a4 100644 --- a/.github/workflows/ci_templates.yml +++ b/.github/workflows/ci_templates.yml @@ -15,6 +15,8 @@ jobs: steps: - uses: actions/checkout@v3 + - name: Set up Python 3.8 + uses: actions/setup-python@v3 with: python-version: 3.8