config-Top5.yml

path_out: "/prj/NUM_CODEX_PLUS/Amina/CellSubmission/new_runs/output_Top5"  # path to the output directory, if it doesn't exist it will be created 
path_out_celltype: "/prj/NUM_CODEX_PLUS/Amina/CellSubmission/new_runs/output_celltype"  # path to the output directory, if it doesn't exist it will be created 

# path_out: "/prj/NUM_CODEX_PLUS/Amina/CellSubmission/Prediction_scOmics/output_rop"  # path to the output directory, if it doesn't exist it will be created 

path_inp: "/prj/NUM_CODEX_PLUS/Amina/CellSubmission/code_v1/data"     # path to the directory containing the input datasets

# INPUTS PARAMS
training_data:    # training datasets (they will be merged, then 80% will be used for thetraining and 20% for the validation)
    set14:  'bonn.h5Seurat'           
    set1: 'berlin.h5Seurat'         

test_data:               # testing datasets
    set3:  'korean.h5Seurat'       
    set4:  'stanford.h5Seurat'    

nbTopGenes: 5