setup.py

# Cython compile instructions

from setuptools import setup

from setuptools import Extension, find_packages
# import numpy
import os
import glob
from sys import platform
import sys
import sysconfig
# py_modules = ['alphaimpute2']

# py_modules += [os.path.join('src','General', 'InputOutput')]
# py_modules += [os.path.join('src','General', 'Pedigree')]
# src_modules = []
# src_modules += glob.glob(os.path.join('src','tinyhouse', '*.py'))
# src_modules += glob.glob(os.path.join('src','Imputation', '*.py'))

# src_modules = [os.path.splitext(file)[0] for file in src_modules]
# py_modules += src_modules

setup(
    name="AlphaImpute2",
    version="0.0.3",
    author="Andrew Whalen",
    author_email="awhalen@roslin.ed.ac.uk",
    description="An imputation software for massive livestock populations.",
    long_description="An imputation software for massive livestock populations.",
    long_description_content_type="text/markdown",
    url="",
    license="MIT license",

    packages=['alphaimpute2', 'alphaimpute2.tinyhouse','alphaimpute2.Imputation'],
    package_dir={'': 'src'},

    classifiers=[
        "Programming Language :: Python :: 3",
    ],
    entry_points = {
    'console_scripts': [
        'AlphaImpute2=alphaimpute2.alphaimpute2:main'
        ],
    },
    install_requires=[
        'numpy>=1.19',
        'numba>=0.49.0'
    ]
)