Build container with docker build -t user/reponame:tag . given the Dockerfile is in the current directory. Then, given the repository was created at DockerHub, push it to the Hub via docker push user/reponame:tag. This can either be done from local machine or directly via GitPod. In the future we might add a GitHub Actions to automate that upon pushes to the environment.yml.
- update versions
- add a
conda cleanto reduce size of image
- update versions and use
- update to Bioconductor 3.16
- updated salmon to 1.9.0 and build with current versions from the environment.yml
- update mambaforge image to 4.14.0-0
- omitted micromamba as previously used Dockerfiles now magically fail to build with non-helpful error messages -- now mambaforge again
- added salmon binary to PATH as the conda install for it has some issues related to dependencies with incorrect versions, and all other software via conda
- switched to micromamba base image
- added tzdata to apt-get install to set a timezone which is not part of the stripped-down mambaforge container
- added multiqc
- first commit