From 06c8d40814f68cbf4d24b2ea70a11407bc40d072 Mon Sep 17 00:00:00 2001
From: drosofff <drosofff@gmail.com>
Date: Tue, 25 Jun 2019 00:59:22 +0200
Subject: [PATCH] fix labels of outputs for 5 tools, and bump to 0.9.1

---
 tools/gsc_cpm_tpm_rpk/cpm_tpm_rpk.xml                     | 6 +++---
 tools/gsc_filter_cells/filter_cells.xml                   | 6 +++---
 tools/gsc_high_dimensions_visualisation/high_dim_visu.xml | 6 +++---
 tools/gsc_mannwhitney_de/mannwhitney_de.xml               | 4 ++--
 tools/gsc_signature_score/signature_score.xml             | 4 ++--
 5 files changed, 13 insertions(+), 13 deletions(-)

diff --git a/tools/gsc_cpm_tpm_rpk/cpm_tpm_rpk.xml b/tools/gsc_cpm_tpm_rpk/cpm_tpm_rpk.xml
index b20e35aa4..d5dd363d2 100644
--- a/tools/gsc_cpm_tpm_rpk/cpm_tpm_rpk.xml
+++ b/tools/gsc_cpm_tpm_rpk/cpm_tpm_rpk.xml
@@ -1,4 +1,4 @@
-<tool id="cpm_tpm_rpk" name="Generate CPM, TPM, RPK" version="0.9.0">
+<tool id="cpm_tpm_rpk" name="Generate CPM, TPM, RPK" version="0.9.1">
     <description>from raw counts expression values</description>
     <requirements>
         <requirement type="package" version="1.6.0">r-optparse</requirement>
@@ -76,10 +76,10 @@
         </param>
     </inputs>
     <outputs>
-        <data name="output" format="tabular" label="${option.type_transfo} from ${on_string}">
+        <data name="output" format="tabular" label="${option.type_transfo} of ${on_string}">
             <filter>log == "FALSE"</filter>
         </data>
-        <data name="output_log" format="tabular" label="log2(${option.type_transfo} +1) from ${on_string}">
+        <data name="output_log" format="tabular" label="log2(${option.type_transfo} +1) of ${on_string}">
             <filter>log == "TRUE"</filter>
         </data>
     </outputs>
diff --git a/tools/gsc_filter_cells/filter_cells.xml b/tools/gsc_filter_cells/filter_cells.xml
index 10f948864..53297cd97 100644
--- a/tools/gsc_filter_cells/filter_cells.xml
+++ b/tools/gsc_filter_cells/filter_cells.xml
@@ -1,4 +1,4 @@
-<tool id="filter_cells" name="Filter cells data" version="0.9.0">
+<tool id="filter_cells" name="Filter cells data" version="0.9.1">
     <description>on total aligned reads and/or number of detected genes</description>
     <requirements>
         <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement>
@@ -54,8 +54,8 @@
     </inputs>
     <outputs>
         <data name="pdfplot" format="pdf" label="Plots from ${on_string}" />
-        <data name="output" format="tabular" label="Cell data filtered with ${on_string}" />
-        <data name="output_metada" format="tabular" label="Cell metadata filtered with ${on_string}" />
+        <data name="output" format="tabular" label="Cell data filtered from ${on_string}" />
+        <data name="output_metada" format="tabular" label="Cell metadata filtered from ${on_string}" />
     </outputs>
     <tests>
         <test>
diff --git a/tools/gsc_high_dimensions_visualisation/high_dim_visu.xml b/tools/gsc_high_dimensions_visualisation/high_dim_visu.xml
index d7ed26ac7..b932fdf3c 100644
--- a/tools/gsc_high_dimensions_visualisation/high_dim_visu.xml
+++ b/tools/gsc_high_dimensions_visualisation/high_dim_visu.xml
@@ -1,4 +1,4 @@
-<tool id="high_dimensions_visualisation" name="Generate PCA, tSNE and HCPC" version="0.9.0">
+<tool id="high_dimensions_visualisation" name="Generate PCA, tSNE and HCPC" version="0.9.1">
     <description>from highly dimensional expression data</description>
     <requirements>
         <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement>
@@ -166,8 +166,8 @@
              
     </inputs>
     <outputs>
-        <data name="pdf_out" format="pdf" label="${visualisation.visu_choice} on ${on_string}" />
-        <data name="table_coordinates" format="tabular" label="Scatter plot coordinates from ${tool.name} on ${on_string}" >
+        <data name="pdf_out" format="pdf" label="${visualisation.visu_choice} of ${on_string}" />
+        <data name="table_coordinates" format="tabular" label="Scatter plot coordinates from ${visualisation.visu_choice} of ${on_string}" >
             <filter>coord == 'yes'</filter>
         </data>
     </outputs>
diff --git a/tools/gsc_mannwhitney_de/mannwhitney_de.xml b/tools/gsc_mannwhitney_de/mannwhitney_de.xml
index d867e8008..6600d5c1b 100644
--- a/tools/gsc_mannwhitney_de/mannwhitney_de.xml
+++ b/tools/gsc_mannwhitney_de/mannwhitney_de.xml
@@ -1,4 +1,4 @@
-<tool id="mannwhitney_de" name="Perform a differential analysis" version="0.9.0">
+<tool id="mannwhitney_de" name="Perform a differential analysis" version="0.9.1">
     <description>using a Mann-Whitney test</description>
     <requirements>
         <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement>
@@ -43,7 +43,7 @@
 
     </inputs>
     <outputs>
-        <data name="output" format="tabular" label="Results of Mann-Whitney differential analysis from ${on_string}" />
+        <data name="output" format="tabular" label="Results of Mann-Whitney differential analysis of ${on_string}" />
     </outputs>
     <tests>
         <test>
diff --git a/tools/gsc_signature_score/signature_score.xml b/tools/gsc_signature_score/signature_score.xml
index 9ebfce07b..a0f14a46f 100644
--- a/tools/gsc_signature_score/signature_score.xml
+++ b/tools/gsc_signature_score/signature_score.xml
@@ -36,9 +36,9 @@
                help="signature gene that are not expressed in at least this percentage of cells will not be kept to compute the effective signature" />
     </inputs>
     <outputs>
-        <data name="pdf" format="pdf" label="Plots from ${on_string}" />
+        <data name="pdf" format="pdf" label="Signatures plots from ${on_string}" />
         <data name="output" format="tabular" label="signature scores from ${on_string}" />
-        <data name="stats" format="tabular" label="genes statistics in ${on_string}" />
+        <data name="stats" format="tabular" label="genes statistics from ${on_string}" />
     </outputs>
     <tests>
         <test>