to_nibabel issue

[ntustison]

Hey @stnava ,

When processing a subject through antspymm, I'm getting the
following issue:

...
JHU reg
begin tracking
Traceback (most recent call last):
  File "/Users/ntustison/.local/lib/python3.12/site-packages/antspymm/mm.py", line 8533, in mm_csv
    tabPro, normPro = mm( t1, hier,
                      ^^^^^^^^^^^^^
  File "/Users/ntustison/.local/lib/python3.12/site-packages/antspymm/mm.py", line 7154, in mm
    output_dict['tractography'] = dwi_deterministic_tracking(
                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/ntustison/.local/lib/python3.12/site-packages/antspymm/mm.py", line 4173, in dwi_deterministic_tracking
    dwi_img = dwi.to_nibabel()
              ^^^^^^^^^^^^^^
AttributeError: 'ANTsImage' object has no attribute 'to_nibabel'
...

I've updated ANTsPy, ANTsPyNet, ANTsPyT1w, and ANTsPyMM
and so I'm guessing it's the nibabel change discussed here.

Any thoughts on how to go about fixing it? I'm willing to help
which I imagine we could do by trying out one of the solutions
proposed but I figured I'd ask first.

Nick

[stnava]

Can we just add a local helper to antspymm ?

This is likely the only place it’s used

[ntustison]

Thanks. Sure, let me try that locally and I'll get back to you.

[ntustison]

#21