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Directly turn bam file to UMI count? #75

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WT215 opened this issue May 5, 2022 · 0 comments
Open

Directly turn bam file to UMI count? #75

WT215 opened this issue May 5, 2022 · 0 comments

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@WT215
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WT215 commented May 5, 2022

I need to filter out some reads from bam file from visium. Is it possible to directly turn that bam file to UMI count without transforming back to fastq?

I know there are some tools available, but it could not be better if using the same tool as used in space ranger.
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